{"id":35179,"date":"2024-12-20T03:59:50","date_gmt":"2024-12-19T19:59:50","guid":{"rendered":"https:\/\/17aitech.com\/?p=35179"},"modified":"2024-12-20T03:59:50","modified_gmt":"2024-12-19T19:59:50","slug":"%e9%a2%84%e6%b5%8b%e8%9b%8b%e7%99%bd%e8%b4%a8-dna%e7%bb%93%e5%90%88%e7%89%b9%e5%bc%82%e6%80%a7%ef%bc%8c%e5%8d%97%e5%8a%a0%e5%b7%9e%e5%a4%a7%e5%ad%a6%e5%9b%a2%e9%98%9f%e5%bc%80%e5%8f%91%e5%87%a0","status":"publish","type":"post","link":"https:\/\/17aitech.com\/?p=35179","title":{"rendered":"\u9884\u6d4b\u86cb\u767d\u8d28-DNA\u7ed3\u5408\u7279\u5f02\u6027\uff0c\u5357\u52a0\u5dde\u5927\u5b66\u56e2\u961f\u5f00\u53d1\u51e0\u4f55\u6df1\u5ea6\u5b66\u4e60\u65b0\u65b9\u6cd5"},"content":{"rendered":"

\u6587\u7ae0\u6765\u6e90\u4e8e\u4e92\u8054\u7f51:\u9884\u6d4b\u86cb\u767d\u8d28-DNA\u7ed3\u5408\u7279\u5f02\u6027\uff0c\u5357\u52a0\u5dde\u5927\u5b66\u56e2\u961f\u5f00\u53d1\u51e0\u4f55\u6df1\u5ea6\u5b66\u4e60\u65b0\u65b9\u6cd5<\/a><\/p>\n

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\u7f16\u8f91 | \u841d\u535c\u76ae<\/p>\n

\u9884\u6d4b\u86cb\u767d\u8d28-DNA \u7ed3\u5408\u7279\u5f02\u6027\u662f\u4e00\u9879\u5177\u6709\u6311\u6218\u6027\u4f46\u53c8\u81f3\u5173\u91cd\u8981\u7684\u4efb\u52a1\uff0c\u6709\u52a9\u4e8e\u7406\u89e3\u57fa\u56e0\u8c03\u63a7\u3002\u86cb\u767d\u8d28-DNA \u590d\u5408\u7269\u901a\u5e38\u4e0e\u9009\u5b9a\u7684 DNA \u9776\u4f4d\u7ed3\u5408\uff0c\u800c\u86cb\u767d\u8d28\u5219\u4ee5\u4e0d\u540c\u7a0b\u5ea6\u7684\u7ed3\u5408\u7279\u5f02\u6027\u4e0e\u5e7f\u6cdb\u7684 DNA \u5e8f\u5217\u7ed3\u5408\u3002\u8fd9\u4e9b\u4fe1\u606f\u65e0\u6cd5\u5728\u5355\u4e00\u7ed3\u6784\u4e2d\u76f4\u63a5\u83b7\u53d6\u3002<\/p>\n

\u4e3a\u4e86\u83b7\u53d6\u8fd9\u4e9b\u4fe1\u606f\uff0c\u5357\u52a0\u5dde\u5927\u5b66\uff08University of Southern California\uff09\u548c\u534e\u76db\u987f\u5927\u5b66\uff08University of Washington\uff09\u7684\u7814\u7a76\u4eba\u5458\u63d0\u51fa\u4e86\u6df1\u5ea6\u7ed3\u5408\u7279\u5f02\u6027\u9884\u6d4b\u5668\uff08DeepPBS\uff09\uff0c\u8fd9\u662f\u4e00\u79cd\u51e0\u4f55\u6df1\u5ea6\u5b66\u4e60<\/mark>\u6a21\u578b\uff0c\u65e8\u5728\u6839\u636e\u86cb\u767d\u8d28-DNA \u7ed3\u6784\u9884\u6d4b\u7ed3\u5408\u7279\u5f02\u6027\u3002<\/p>\n

DeepPBS \u53ef\u4ee5\u63d0\u53d6\u53ef\u89e3\u91ca\u7684\u754c\u9762\u6b8b\u57fa\u86cb\u767d\u8d28\u91cd\u539f\u5b50\u91cd\u8981\u6027\u5f97\u5206\u3002\u5f53\u5728\u86cb\u767d\u8d28\u6b8b\u57fa\u6c34\u5e73\u4e0a\u805a\u5408\u65f6\uff0c\u8fd9\u4e9b\u5f97\u5206\u901a\u8fc7\u8bf1\u53d8\u5b9e\u9a8c\u8fdb\u884c\u9a8c\u8bc1\u3002\u5e94\u7528\u4e8e\u9488\u5bf9\u7279\u5b9a DNA \u5e8f\u5217\u7684\u8bbe\u8ba1\u86cb\u767d\u8d28\uff0cDeepPBS \u88ab\u8bc1\u660e\u53ef\u4ee5\u9884\u6d4b\u5b9e\u9a8c\u6d4b\u91cf\u7684\u7ed3\u5408\u7279\u5f02\u6027\u3002<\/p>\n

\u8be5\u7814\u7a76\u4ee5\u300cGeometric deep learning of protein\u2013DNA binding specificity<\/em>\u300d\u4e3a\u9898\uff0c\u4e8e 2024 \u5e74 8 \u6708 5 \u65e5\u53d1\u5e03\u5728\u300aNature Methods<\/em>\u300b\u3002<\/p>\n

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\u8f6c\u5f55\u56e0\u5b50\u901a\u8fc7\u4e0e\u7279\u5b9aDNA\u5e8f\u5217\u7684\u7ed3\u5408\u6765\u8c03\u8282\u751f\u547d\u8fc7\u7a0b\uff0c\u8fd9\u79cd\u7ed3\u5408\u673a\u5236\u5305\u62ec\u9759\u7535\u76f8\u4e92\u4f5c\u7528\u3001\u8131\u6c27\u6838\u7cd6\u5806\u79ef\u6548\u5e94\uff0c\u4ee5\u53ca\u6c22\u952e\u7684\u5f62\u6210\u7b49\u3002<\/p>\n

\u86cb\u767d\u8d28-DNA\u7684\u7ed3\u6784\u4fe1\u606f\u901a\u5e38\u901a\u8fc7X\u5c04\u7ebf\u6676\u4f53\u5b66\u3001\u6838\u78c1\u5171\u632f\u6ce2\u8c31\u6216\u4f4e\u6e29\u7535\u5b50\u663e\u5fae\u955c\u7b49\u5b9e\u9a8c\u65b9\u6cd5\u83b7\u53d6\uff0c\u5e76\u5b58\u50a8\u5728\u86cb\u767d\u8d28\u6570\u636e\u5e93<\/mark>\uff08PDB\uff09\u4e2d\u3002\u8fd9\u4e9b\u7ed3\u6784\u901a\u5e38\u5c55\u793a\u4e86\u7ed3\u5408\u7684 DNA \u5e8f\u5217\u53ca\u5176\u7269\u7406\u5316\u5b66\u76f8\u4e92\u4f5c\u7528\uff0c\u4f46\u65e0\u6cd5\u6db5\u76d6\u6240\u6709\u53ef\u80fd\u7684\u7ed3\u5408\u5e8f\u5217\u3002<\/p>\n

\u53e6\u4e00\u65b9\u9762\uff0c\u9ad8\u901a\u91cf\u5b9e\u9a8c\u5982\u86cb\u767d\u8d28\u7ed3\u5408\u5fae\u9635\u5217\u3001SELEX-seq \u7b49\u80fd\u591f\u6355\u6349\u6f5c\u5728\u7684\u7ed3\u5408\u5e8f\u5217\u8303\u56f4\uff0c\u4f46\u7f3a\u4e4f\u7ed3\u6784\u4fe1\u606f\u3002<\/p>\n

\u56e0\u6b64\uff0c\u7ed3\u5408\u7ed3\u6784\u6570\u636e\u548c\u9ad8\u901a\u91cf\u5b9e\u9a8c\u6570\u636e\u5bf9\u4e8e\u5168\u9762\u7406\u89e3\u8f6c\u5f55\u56e0\u5b50\u7684\u7ed3\u5408\u7279\u5f02\u6027\u81f3\u5173\u91cd\u8981\u3002<\/p>\n

\u76ee\u524d\uff0c\u9884\u6d4b\u7279\u5b9a\u86cb\u767d\u8d28\u5e8f\u5217\u5728\u86cb\u767d\u8d28\u5bb6\u65cf\u4e2d\u7684\u7ed3\u5408\u7279\u5f02\u6027\uff0c\u4ecd\u7136\u662f\u4e00\u4e2a\u5177\u6709\u6311\u6218\u6027\u4e14\u5c1a\u672a\u89e3\u51b3\u7684\u95ee\u9898\u3002\u7ed3\u5408\u80cc\u666f\u4e0b\u7684\u7ed3\u6784\u53d8\u5316\u4ee5\u53ca\u5e9e\u6742\u7684\u673a\u5236\u591a\u6837\u6027\u52a0\u5267\u4e86\u8fd9\u4e00\u56f0\u96be\u3002<\/p>\n

\u300c\u86cb\u767d\u8d28-DNA \u590d\u5408\u7269\u7684\u7ed3\u6784\u5305\u542b\u901a\u5e38\u4e0e\u5355\u4e2a DNA \u5e8f\u5217\u7ed3\u5408\u7684\u86cb\u767d\u8d28\u3002\u4e3a\u4e86\u7406\u89e3\u57fa\u56e0\u8c03\u63a7\uff0c\u4e86\u89e3\u86cb\u767d\u8d28\u4e0e\u4efb\u4f55 DNA \u5e8f\u5217\u6216\u57fa\u56e0\u7ec4\u533a\u57df\u7684\u7ed3\u5408\u7279\u5f02\u6027\u975e\u5e38\u91cd\u8981\u3002\u300d\u5357\u52a0\u5dde\u5927\u5b66\u7684 Remo Rohs \u6559\u6388\u8bf4\u3002<\/p>\n

\u5728\u6700\u65b0\u7684\u7814\u7a76\u4e2d\uff0c\u5357\u52a0\u5dde\u5927\u5b66\u548c\u534e\u76db\u987f\u5927\u5b66\u7684\u7814\u7a76\u4eba\u5458\u5f15\u5165\u4e86\u7ed3\u5408\u7279\u5f02\u6027\u6df1\u5ea6\u9884\u6d4b\u5668 (DeepPBS)\u3002<\/p>\n

Rohs \u89e3\u91ca\u9053\uff1a\u300cDeepPBS \u662f\u4e00\u79cd\u4eba\u5de5\u667a\u80fd<\/mark>\u5de5\u5177\uff0c\u5b83\u53d6\u4ee3\u4e86\u9ad8\u901a\u91cf\u6d4b\u5e8f\u6216\u7ed3\u6784\u751f\u7269\u5b66\u5b9e\u9a8c\u6765\u63ed\u793a\u86cb\u767d\u8d28-DNA \u7ed3\u5408\u7279\u5f02\u6027\u3002\u300d<\/p>\n

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\u56fe\u793a\uff1aDeepPBS\u6846\u67b6\u7684\u793a\u610f\u56fe\u3002\uff08\u6765\u6e90\uff1a\u8bba\u6587\uff09<\/section>\n

\u8be5\u6df1\u5ea6\u5b66\u4e60<\/mark>\u6a21\u578b\u65e8\u5728\u6355\u6349\u86cb\u767d\u8d28-DNA \u76f8\u4e92\u4f5c\u7528\u7684\u7269\u7406\u5316\u5b66\u548c\u51e0\u4f55\u80cc\u666f\uff0c\u4ee5\u9884\u6d4b\u7ed3\u5408\u7279\u5f02\u6027\uff0c\u8868\u793a\u4e3a\u57fa\u4e8e\u7ed9\u5b9a\u86cb\u767d\u8d28-DNA\u7ed3\u6784\u7684\u4f4d\u7f6e\u6743\u91cd<\/mark>\u77e9\u9635\uff08PWM\uff09\u3002DeepPBS \u8de8\u86cb\u767d\u8d28\u5bb6\u65cf\u53d1\u6325\u4f5c\u7528\uff0c\u5e76\u5145\u5f53\u7ed3\u6784\u786e\u5b9a\u548c\u7ed3\u5408\u7279\u5f02\u6027\u786e\u5b9a\u5b9e\u9a8c\u4e4b\u95f4\u7684\u6865\u6881\u3002<\/p>\n

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\u56fe\u793a\uff1aDeepPBS \u7528\u4e8e\u9884\u6d4b\u8de8\u86cb\u767d\u8d28\u5bb6\u65cf\u7684\u7ed3\u5408\u7279\u5f02\u6027\u7684\u6027\u80fd\u3002\uff08\u6765\u6e90\uff1a\u8bba\u6587\uff09<\/p>\n

DeepPBS \u7684\u8f93\u5165\u4e0d\u4ec5\u9650\u4e8e\u5b9e\u9a8c\u7ed3\u6784\u3002\u86cb\u767d\u8d28\u7ed3\u6784\u9884\u6d4b\u65b9\u6cd5\uff08\u5305\u62ec AlphaFold<\/mark>\u3001OpenFold \u548c RoseTTAFold\uff09\u4ee5\u53ca\u86cb\u767d\u8d28-DNA \u590d\u5408\u7269\u5efa\u6a21\u5668\uff08\u4f8b\u5982 RoseTTAFoldNA (RFNA)\u3001RoseTTAFold All-Atom\u3001MELD-DNA \u548c AlphaFold<\/mark>3\uff09\u7684\u5feb\u901f\u53d1\u5c55\uff0c\u5bfc\u81f4\u53ef\u4f9b\u5206\u6790\u7684\u7ed3\u6784\u6570\u636e\u6570\u91cf\u5448\u6307\u6570\u7ea7\u589e\u957f\u3002<\/p>\n

\u8fd9\u4e00\u573a\u666f\u51f8\u663e\u4e86\u5bf9\u7528\u4e8e\u5206\u6790\u86cb\u767d\u8d28-DNA \u7ed3\u6784\u7684\u901a\u7528\u8ba1\u7b97\u6a21\u578b\u7684\u9700\u6c42\u65e5\u76ca\u589e\u957f\u3002\u7814\u7a76\u4eba\u5458\u5c55\u793a\u4e86 DeepPBS \u5982\u4f55\u4e0e\u7ed3\u6784\u9884\u6d4b\u65b9\u6cd5\u7ed3\u5408\u4f7f\u7528\uff0c\u4ee5\u9884\u6d4b\u6ca1\u6709\u53ef\u7528\u5b9e\u9a8c\u7ed3\u6784\u7684\u86cb\u767d\u8d28\u7684\u7279\u5f02\u6027\u3002<\/p>\n

\u6b64\u5916\uff0c\u901a\u8fc7\u4f7f\u7528 DeepPBS \u53cd\u9988\u4f18\u5316\u7ed3\u5408 DNA\uff0c\u53ef\u4ee5\u6539\u8fdb\u86cb\u767d\u8d28-DNA \u590d\u5408\u7269\u7684\u8bbe\u8ba1\u3002\u7814\u7a76\u4eba\u5458\u8868\u660e\uff0c\u6b64\u6d41\u7a0b\u4e0e\u6700\u8fd1\u7684\u5bb6\u65cf\u7279\u5b9a\u6a21\u578b rCLAMPS \u76f8\u6bd4\u6027\u80fd\u76f8\u5f53\uff0c\u540c\u65f6\u66f4\u5177\u901a\u7528\u6027\uff1a\u5177\u4f53\u800c\u8a00\uff0cDeepPBS \u4e0d\u53d7\u86cb\u767d\u8d28\u5bb6\u65cf\u9650\u5236\uff0c\u53ef\u4ee5\u5904\u7406\u751f\u7269\u7ec4\u88c5\u5e76\u53ef\u4ee5\u9884\u6d4b DNA \u4fa7\u94fe\u504f\u597d\u3002<\/p>\n

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\u56fe\u793a\uff1aDeepPBS \u5728\u9884\u6d4b\u86cb\u767d\u8d28-DNA \u590d\u5408\u7269\u7ed3\u6784\u4e2d\u7684\u5e94\u7528\u3002\uff08\u6765\u6e90\uff1a\u8bba\u6587\uff09<\/p>\n

\u5728\u53ef\u89e3\u91ca\u6027\u65b9\u9762\uff0c\u53ef\u4ee5\u4ece DeepPBS \u4e2d\u63d0\u53d6\u4e0e DNA \u76f8\u4e92\u4f5c\u7528\u7684\u86cb\u767d\u8d28\u4e2d\u4e0d\u540c\u91cd\u539f\u5b50\u7684\u300c\u76f8\u5bf9\u91cd\u8981\u6027\u300d\uff08RI\uff09\u5206\u6570\u3002<\/p>\n

\u4f5c\u4e3a\u5bf9\u764c\u75c7\u53d1\u5c55\u6709\u91cd\u8981\u610f\u4e49\u7684\u86cb\u767d\u8d28\u7684\u6848\u4f8b\u7814\u7a76\uff0c\u7814\u7a76\u4eba\u5458\u901a\u8fc7\u8fd9\u4e9b RI \u5206\u6570\u5206\u6790 p53-DNA \u754c\u9762\uff0c\u5e76\u5c06\u5176\u4e0e\u73b0\u6709\u6587\u732e\u8054\u7cfb\u8d77\u6765\u8fdb\u884c\u9a8c\u8bc1\u3002<\/p>\n

\u5e76\u4e14\uff0cDeepPBS \u5206\u6570\u4e0e\u73b0\u6709\u77e5\u8bc6\u975e\u5e38\u543b\u5408\uff0c\u5e76\u4e14\u53ef\u4ee5\u6c47\u603b\u4ee5\u4e0e\u4e19\u6c28\u9178\u626b\u63cf\u8bf1\u53d8\u5b9e\u9a8c\u4ea7\u751f\u5408\u7406\u7684\u4e00\u81f4\u6027\u3002<\/p>\n

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\u56fe\u793a\uff1a\u4ee5 p53-DNA \u754c\u9762\u4e2d DeepPBS \u91cd\u8981\u6027\u5206\u6570\u7684\u53ef\u89c6\u5316\u4e3a\u4f8b\u8fdb\u884c\u7814\u7a76\uff0c\u5e76\u8fdb\u884c\u5b9e\u9a8c\u9a8c\u8bc1\u3002\uff08\u6765\u6e90\uff1a\u8bba\u6587\uff09<\/p>\n

\u5728\u989d\u5916\u7684\u539f\u7406\u9a8c\u8bc1\u7814\u7a76\u4e2d\uff0c\u7814\u7a76\u4eba\u5458\u5c06 DeepPBS \u5e94\u7528\u4e8e\u9488\u5bf9\u7279\u5b9a DNA \u5e8f\u5217\u7684\u8ba1\u7b97\u673a\u8bbe\u8ba1\u7684\u86cb\u767d\u8d28-DNA \u590d\u5408\u7269\uff0c\u8be5\u590d\u5408\u7269\u6765\u81ea\u6700\u8fd1\u4e00\u9879\u7ed3\u5408\u7ed3\u6784\u8bbe\u8ba1\u4e0e DNA \u8bf1\u53d8\u5b9e\u9a8c\u7684\u7814\u7a76\u3002DeepPBS \u4e5f\u53ef\u7528\u4e8e\u5206\u6790\u5206\u5b50\u6a21\u62df\u8f68\u8ff9\u3002<\/p>\n

\u300c\u5bf9\u4e8e\u7814\u7a76\u4eba\u5458\u6765\u8bf4\uff0c\u627e\u5230\u4e00\u79cd\u9002\u7528\u4e8e\u6240\u6709\u86cb\u767d\u8d28\u3001\u800c\u4e0d\u5c40\u9650\u4e8e\u67d0\u4e2a\u7814\u7a76\u900f\u5f7b\u7684\u86cb\u767d\u8d28\u5bb6\u65cf\u7684\u65b9\u6cd5\u975e\u5e38\u91cd\u8981\u3002\u8fd9\u79cd\u65b9\u6cd5\u8fd8\u4f7f\u6211\u4eec\u80fd\u591f\u8bbe\u8ba1\u65b0\u7684\u86cb\u767d\u8d28\u3002\u300dRohs \u8bf4\u9053\u3002<\/p>\n

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\u56fe\u793a\uff1a\u5c06 DeepPBS \u5e94\u7528\u4e8e\u9488\u5bf9\u7279\u5b9a DNA \u5e8f\u5217\u7684\u8ba1\u7b97\u673a\u8bbe\u8ba1 HTH \u652f\u67b6\u3002\uff08\u6765\u6e90\uff1a\u8bba\u6587\uff09<\/p>\n

\u5f53\u524d\u7248\u672c\u7684 DeepPBS \u5b58\u5728\u56fa\u6709\u7684\u5c40\u9650\u6027\u3002\u5b83\u662f\u9488\u5bf9\u53cc\u94fe DNA \u91cf\u8eab\u5b9a\u5236\u7684\uff0c\u5c1a\u4e0d\u9002\u7528\u4e8e\u5355\u94fe DNA\u3001RNA \u6216\u5316\u5b66\u4fee\u9970\u78b1\u57fa\u3002<\/p>\n

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DeepPBS\uff1ahttps:\/\/deeppbs.usc.edu<\/em><\/p>\n

\u8bba\u6587\u94fe\u63a5\uff1ahttps:\/\/www.nature.com\/articles\/s41592-024-02372-w<\/em><\/section>\n
\u76f8\u5173\u62a5\u9053\uff1ahttps:\/\/phys.org\/news\/2024-08-ai-accuracy-proteindna.html<\/em><\/section>\n

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