{"id":39860,"date":"2025-04-03T03:02:20","date_gmt":"2025-04-02T19:02:20","guid":{"rendered":"https:\/\/17aitech.com\/?p=39860"},"modified":"2025-04-03T03:02:20","modified_gmt":"2025-04-02T19:02:20","slug":"%e9%a2%84%e6%b5%8b%e7%b2%be%e5%ba%a6%e8%be%be93%ef%bc%8c%e4%b8%aa%e4%ba%ba%e7%94%b5%e8%84%91%e5%8f%af%e9%83%a8%e7%bd%b2%ef%bc%8c%e7%a7%91%e5%ad%a6%e5%ae%b6%e5%bc%80%e5%8f%91transformer%e6%96%b0","status":"publish","type":"post","link":"https:\/\/17aitech.com\/?p=39860","title":{"rendered":"\u9884\u6d4b\u7cbe\u5ea6\u8fbe93%\uff0c\u4e2a\u4eba\u7535\u8111\u53ef\u90e8\u7f72\uff0c\u79d1\u5b66\u5bb6\u5f00\u53d1Transformer\u65b0\u65b9\u6cd5\u9884\u6d4b\u7ed3\u5408\u86cb\u767d"},"content":{"rendered":"

\u6587\u7ae0\u6765\u6e90\u4e8e\u4e92\u8054\u7f51:\u9884\u6d4b\u7cbe\u5ea6\u8fbe93%\uff0c\u4e2a\u4eba\u7535\u8111\u53ef\u90e8\u7f72\uff0c\u79d1\u5b66\u5bb6\u5f00\u53d1Transformer\u65b0\u65b9\u6cd5\u9884\u6d4b\u7ed3\u5408\u86cb\u767d<\/a><\/p>\n

<\/a><\/section>\n

\u7f16\u8f91\u4e28&<\/p>\n

\u7ed3\u5408\u86cb\u767d\u901a\u8fc7\u4e0e\u7279\u5b9a\u5206\u5b50\uff08\u5982 DNA\u3001RNA \u6216\u80bd\uff09\u9009\u62e9\u6027\u76f8\u4e92\u4f5c\u7528\u6765\u8c03\u8282\u5404\u79cd\u7ec6\u80de\u8fc7\u7a0b\uff0c\u5b83\u4eec\u80fd\u4ee5\u9ad8\u7279\u5f02\u6027\u8bc6\u522b\u548c\u7ed3\u5408\u9776\u5206\u5b50\uff0c\u8fd9\u4f7f\u5f97\u5b83\u4eec\u5728\u4fe1\u53f7\u4f20\u5bfc\u3001\u8f6c\u8fd0\u548c\u9176\u6d3b\u6027\u529f\u80fd\u4e0a\u6709\u7740\u81f3\u5173\u91cd\u8981\u7684\u5730\u4f4d\u3002<\/p>\n

\u5f53\u524d\uff0c\u7528\u4e8e\u9274\u5b9a\u86cb\u767d\u8d28\u7ed3\u5408\u80bd\u7684\u4f20\u7edf\u65b9\u6cd5\u6548\u7387\u4f4e\u4e0b\u4e14\u6027\u4ef7\u6bd4\u6781\u4f4e\uff0c\u800c\u57fa\u4e8e\u5e8f\u5217\u7684\u65b9\u6cd5\u56e0\u8fc7\u4e8e\u72ed\u9698\u5730\u5173\u6ce8\u8fd1\u7aef\u5e8f\u5217\u7279\u5f81\u800c\u5ffd\u7565\u4e86\u7ed3\u6784\u6570\u636e\uff0c\u5bfc\u81f4\u6ca1\u6709\u4e00\u79cd\u826f\u597d\u7684\u65b9\u5f0f\u8fdb\u884c\u7ed3\u5408\u86cb\u767d\u9884\u6d4b\u3002<\/p>\n

\u963f\u5bcc\u6c57\u547c\u7f57\u73ca\u5927\u5b66\uff08Khurasan University\uff09\u9886\u5bfc\u4e86\u4e00\u9879\u7814\u7a76\uff0c\u63a8\u51fa\u4e00\u6b3e\u540d\u4e3a Deep-ProBind \u7684\u5f3a\u5927\u9884\u6d4b\u6a21\u578b\uff0c\u65e8\u5728\u901a\u8fc7\u6574\u5408\u5e8f\u5217\u548c\u7ed3\u6784\u4fe1\u606f\u5bf9\u86cb\u767d\u8d28\u7ed3\u5408\u4f4d\u70b9\u8fdb\u884c\u5206\u7c7b\u3002<\/p>\n

\u8be5\u6a21\u578b\u57fa\u51c6\u6570\u636e\u96c6\u4e0a\u5b9e\u73b0\u4e86 10 \u500d\u4ea4\u53c9\u9a8c\u8bc1\u7684\u51c6\u786e\u7387\u8fbe\u5230 92.67%\uff0c\u5728\u72ec\u7acb\u6837\u672c\u4e0a\u5b9e\u73b0\u4e86 93.62% \u7684\u51c6\u786e\u7387\uff0c\u8bad\u7ec3\u6570\u636e\u65b9\u9762\u76f8\u8f83\u4e8e\u73b0\u6709\u6a21\u578b\u5206\u522b\u9ad8\u51fa 3.57% \u4e0e 1.52%\u3002<\/p>\n

\u4ed6\u4eec\u7684\u7814\u7a76\u4ee5\u300aDeep-ProBind: binding protein prediction with transformer-based deep learning model\u300b\u4e3a\u9898\uff0c\u4e8e 2025 \u5e74 3 \u6708 22 \u65e5\u520a\u767b\u4e8e\u300aBMC Bioinformatics\u300b\u3002<\/p>\n

<\/a><\/section>\n

\u6846\u67b6\u6a21\u578b<\/strong><\/p>\n

\u672c\u7814\u7a76\u4e3b\u8981\u81f4\u529b\u4e8e\u89e3\u51b3\u86cb\u767d\u8d28\u7ed3\u5408\u4f4d\u70b9\u9884\u6d4b\u4e2d\u7684\u4e24\u4e2a\u5173\u952e\u6311\u6218\uff1a\u9700\u8981\u53ef\u9760\u7684\u5927\u89c4\u6a21\u80bd\u7ed3\u5408\u86cb\u767d\u6570\u636e\u96c6\u548c\u5f00\u53d1\u65b0\u7684\u6df1\u5ea6\u5b66\u4e60\u6a21\u578b\u3002\u65b0\u6a21\u578b\u4f7f\u7528\u57fa\u4e8e Transformer \u7684\u6ce8\u610f\u529b\u673a\u5236\u5bf9\u80bd\u8fdb\u884c\u7f16\u7801\uff0c\u5e76\u901a\u8fc7 PsePSSM-DWT \u65b9\u6cd5\u751f\u6210\u8fdb\u5316\u4fe1\u606f\u7279\u5f81\u3002<\/p>\n

\u901a\u8fc7\u6df1\u5ea6\u795e\u7ecf\u7f51\u7edc\uff08DNN\uff09\u6267\u884c\u5206\u7c7b\uff0c\u6a21\u578b\u80fd\u591f\u5b66\u4e60\u6570\u636e\u4e2d\u7684\u590d\u6742\u6a21\u5f0f\uff0c\u6210\u4e3a\u7814\u7a76\u4eba\u5458\u7684\u5f3a\u5927\u5de5\u5177\uff0c\u4e3a\u80bd\u7ed3\u5408\u4f4d\u70b9\u9884\u6d4b\u63d0\u4f9b\u4e86\u4e00\u79cd\u53ef\u9760\u7684\u65b9\u6cd5\u3002<\/p>\n

<\/a><\/section>\n

\u56fe 1\uff1a\u6240\u63d0\u51fa\u6a21\u578b\u7684\u6846\u67b6\u3002\uff08\u56fe\u6e90\uff1a\u8bba\u6587\uff09<\/p>\n

\u7ecf\u8fc7\u5b9e\u9a8c\uff0c\u56e2\u961f\u521b\u5efa\u4e86\u4e00\u4e2a\u5e73\u8861\u7684\u6570\u636e\u96c6\uff0c\u5728\u6d4b\u8bd5\u4e2d\u4f7f\u7528\u4e86\u4e0d\u5e73\u7b49\u7684\u6570\u636e\uff0c\u5373 200 \u4e2a\u9633\u6027\u6837\u672c\u548c 800 \u4e2a\u9634\u6027\u6837\u672c\u4ee5\u53cd\u6620\u771f\u5b9e\u7684\u6570\u636e\u60c5\u51b5\u3002<\/p>\n

\u4e3a\u4e86\u4fdd\u8bc1\u6b63\u786e\u7684\u7279\u5f81\uff0c\u56e2\u961f\u5b9e\u73b0\u4e86\u7279\u5f81\u7f16\u7801\u65b9\u6848\uff0c\u91c7\u7528\u4f4d\u7f6e\u7279\u5f02\u6027\u8bc4\u5206\u77e9\u9635\uff08PSSM\uff09\u3001PsePSSM\u3001\u79bb\u6563\u5c0f\u6ce2\u53d8\u6362 \uff08DWT\uff09\u4e0e Transformer \u7684\u53cc\u5411\u7f16\u7801\u5668\u8868\u793a\uff08BERT\uff09\u8fdb\u884c\u6784\u5efa\u3002<\/p>\n

<\/a><\/section>\n

\u56fe 2\uff1a\u4f7f\u7528\u8bcd\u5d4c\u5165\u7684 ProtBERT-BFD \u6a21\u578b\u3002\uff08\u56fe\u6e90\uff1a\u8bba\u6587\uff09<\/p>\n

\u5177\u4f53\u6765\u8bf4\uff0c\u7814\u7a76\u4e2d\u4f7f\u7528 ProtBERT-BFD\uff0c\u5b83\u5c06\u57fa\u4e8e\u86cb\u767d\u8d28\u7684 BERT \u5d4c\u5165\u4e0e Big Fantastic Database\uff08BFD\uff09\u76f8\u7ed3\u5408\uff0c\u4ee5\u589e\u5f3a\u7279\u5f81\u8868\u793a\u3002\u4f7f\u7528\u5168\u5c40\u5e73\u5747\u6c60\u5316\u5c06\u6807\u8bb0\u5316\u5e8f\u5217\u8f6c\u6362\u4e3a 1024 \u7ef4\u7279\u5f81\u5411\u91cf\uff0c\u7136\u540e\u5c06\u8fd9\u4e9b\u7279\u5f81\u8f93\u5165\u5230\u6df1\u5ea6\u5b66\u4e60\u6a21\u578b\u8fdb\u884c\u9884\u6d4b\u3002<\/p>\n

\u6df1\u5ea6\u67b6\u6784<\/strong><\/p>\n

DNN \u662f ML \u7684\u4e00\u4e2a\u5b50\u5206\u7c7b\uff0c\u5176\u7075\u611f\u6765\u81ea\u4eba\u8111\u7684\u7ed3\u6784\u548c\u529f\u80fd\u3002DNN \u67b6\u6784\u5305\u62ec\u4e00\u4e2a\u8f93\u5165\u5c42\u3001\u51e0\u4e2a\u9690\u85cf\u5c42\u548c\u4e00\u4e2a\u4ecb\u4e8e\u4e24\u8005\u4e4b\u95f4\u7684\u8f93\u51fa\u5c42\u3002<\/p>\n

\u9690\u85cf\u5c42\u5bf9\u4e8e\u7f51\u7edc\u4e86\u89e3\u6570\u636e\u4e2d\u65e0\u6cd5\u5728\u539f\u59cb\u6570\u636e\u4e2d\u68c0\u6d4b\u5230\u7684\u7279\u5f81\u548c\u6a21\u5f0f\u81f3\u5173\u91cd\u8981\uff0c\u867d\u7136\u5176\u6570\u91cf\u589e\u52a0\u4e86\u6620\u5c04\u590d\u6742\u6a21\u5f0f\u7684\u9884\u6d4b\u80fd\u529b\uff0c\u4f46\u4e5f\u53d8\u76f8\u589e\u52a0\u4e86\u96be\u5ea6\u3001\u8ba1\u7b97\u6210\u672c\u548c\u8fc7\u5ea6\u62df\u5408\u7684\u51fa\u73b0\u3002<\/p>\n

\u4f7f\u7528\u57fa\u51c6\u6570\u636e\u96c6\uff0cDNN \u6a21\u578b\u7528\u4e8e\u8bc6\u522b\u86cb\u767d\u8d28\u7ed3\u5408\u80bd\u3002\u6240\u63d0\u51fa\u7684 DNN \u6a21\u578b\u5305\u62ec\u8f93\u5165\u3001\u8f93\u51fa\u548c\u56db\u4e2a\u9690\u85cf\u5c42\uff0c\u901a\u8fc7\u4f7f\u7528\u53cd\u5411\u4f20\u64ad\u7b97\u6cd5\u8fed\u4ee3\u66f4\u6539\u6743\u91cd\uff0c\u51cf\u5c11\u8f93\u51fa\u7c7b\u548c\u76ee\u6807\u7c7b\u4e4b\u95f4\u7684\u8bef\u5dee\uff0c\u4ece\u800c\u6539\u8fdb\u6240\u63d0\u51fa\u7684\u6a21\u578b\u5b66\u4e60\u6280\u672f\u3002<\/p>\n

<\/a><\/section>\n

\u56fe 3\uff1a\u5efa\u8bae\u7684 DNN \u6a21\u578b\u914d\u7f6e\u3002\uff08\u56fe\u6e90\uff1a\u8bba\u6587\uff09<\/p>\n

\u6027\u80fd\u5206\u6790<\/strong><\/p>\n

\u5b9e\u9a8c\u88ab\u67b6\u8bbe\u5728\u7b2c\u516d\u4ee3\u82f1\u7279\u5c14\u9177\u777f i7 \u5904\u7406\u5668\u4e0a\uff0c\u52a0\u5165\u4e86 Tensorflow \u548c Keras \u6765\u6784\u5efa\u6df1\u5ea6\u795e\u7ecf\u7f51\u7edc\uff0c\u4ee5\u53ca Pandas \u548c\u00a0Matplotlib\u00a0\u6765\u505a\u5927\u91cf\u7684\u6570\u636e\u5206\u6790\u3001\u6e05\u7406\u548c\u6574\u7406\u6570\u636e\u4ee5\u8fd0\u884c\u673a\u5668\u5b66\u4e60\u6a21\u578b\u3002<\/p>\n

\u5f53\u4f7f\u7528 Tanh \u4f5c\u4e3a\u6fc0\u6d3b\u51fd\u6570\u548c\u5b66\u4e60\u7387 0.1 \u65f6\uff0cDNN \u5206\u7c7b\u5668\u5728\u57fa\u51c6\u6570\u636e\u96c6\u4e0a\u5b9e\u73b0\u4e86\u6700\u9ad8\u7684\u51c6\u786e\u6027\uff0c\u4e3a 92.67%\u3002\u8be5\u56e2\u961f\u8868\u793a\uff0c\u5173\u4e8e\u5b66\u4e60\u7387\u503c\uff0cDNN \u6a21\u578b\u8fbe\u5230\u4e86\u6700\u5927\u51c6\u786e\u7387\u3002<\/p>\n

\u968f\u7740\u8bad\u7ec3 epoch \u7684\u589e\u52a0\uff0c\u9519\u8bef\u7387\u6301\u7eed\u964d\u4f4e\u3002\u4f8b\u5982\uff0cDNN \u6a21\u578b\u5728\u521d\u59cb epoch \u5f00\u59cb\u65f6\u7684\u8bef\u5dee\u635f\u5931\u4e3a 0.879\uff0c\u5230\u7b2c 50 \u4e2a epoch \u65f6\u7a33\u6b65\u4e0b\u964d\u5230 0.001\u3002<\/p>\n

<\/a><\/section>\n

\u56fe 4\uff1aDNN \u6a21\u578b\u7684\u6027\u80fd\u3002\uff08\u56fe\u6e90\uff1a\u8bba\u6587\uff09<\/p>\n

\u9664\u6b64\u4e4b\u5916\uff0c\u56e2\u961f\u8fd8\u4f7f\u7528 AUC \u6307\u6807\u8fdb\u4e00\u6b65\u68c0\u67e5\u4e86 Deep-ProBind \u7684\u6027\u80fd\uff0cAUC \u6307\u6807\u662f\u4e8c\u8fdb\u5236\u5206\u7c7b\u5668\u51c6\u786e\u6027\u7684\u5173\u952e\u6307\u6807\uff0c\u5206\u6570\u8d8a\u9ad8\u4ee3\u8868\u6027\u80fd\u66f4\u597d\u3002<\/p>\n

Deep-ProBind \u63d0\u4f9b\u4e86\u51fa\u8272\u7684\u7ed3\u679c\uff0c\u5728\u8bad\u7ec3\u6570\u636e\u96c6\u4e0a\u5b9e\u73b0\u4e86 0.941 \u7684 AUC\uff0c\u72ec\u7acb\u6570\u636e\u96c6\u4e0a\u8fbe\u5230\u4e86 0.948 \u7684 AUC\u3002\u7efc\u5408\u6765\u8bf4\uff0cDNN \u6a21\u578b\u7684\u6027\u80fd\u4f18\u4e8e SVM \u7b97\u6cd5\u548c\u5176\u4ed6\u4f20\u7edf ML\u3002<\/p>\n

\u6a21\u578b\u603b\u7ed3<\/strong><\/p>\n

Deep-ProBind \u4ee4\u4eba\u9f13\u821e\u7684\u7ed3\u679c\u7a81\u663e\u4e86\u5176\u5728\u5bfb\u627e\u529f\u80fd\u6027\u80bd\u65b9\u9762\u7684\u7814\u7a76\u6f5c\u529b\u3001\u5b83\u4eec\u5728\u75be\u75c5\u4e2d\u7684\u76f8\u5173\u6027\uff0c\u5c24\u5176\u662f\u5728\u5e94\u6fc0\u53cd\u5e94\u548c\u4e73\u817a\u764c\u4e2d\uff0c\u4ee5\u53ca\u5b83\u4eec\u5728\u5236\u5b9a\u6cbb\u7597\u65b9\u6cd5\u4e2d\u7684\u5e94\u7528\u3002<\/p>\n

\u7814\u7a76\u7684\u76ee\u6807\u662f\u91c7\u7528\u5e76\u884c\u7f16\u7a0b\u65b9\u6cd5\u6765\u89e3\u51b3\u53ef\u6269\u5c55\u6027\u548c\u6548\u7387\u95ee\u9898\uff0c\u901a\u8fc7\u8d85\u53c2\u6570\u4f18\u5316\u548c\u91c7\u7528\u96c6\u6210\u6280\u672f\u6765\u5b8c\u5584\u6a21\u578b\u67b6\u6784\uff0c\u786e\u4fdd\u66f4\u5feb\u3001\u66f4\u8282\u7701\u8d44\u6e90\u7684\u5904\u7406\u3002<\/p>\n

\u5f53\u524d\u7814\u7a76\u7684\u4e00\u4e2a\u5173\u952e\u5c40\u9650\u6027\u662f\u4f9d\u8d56\u4e8e\u76f8\u5bf9\u8f83\u5c0f\u7684\u6570\u636e\u96c6\uff0c\u8fd9\u53ef\u80fd\u4f1a\u9650\u5236\u6a21\u578b\u7684\u6cdb\u5316\u6027\u3002\u7814\u7a76\u7684\u6700\u7ec8\u76ee\u6807\u662f\u901a\u8fc7\u5728\u672a\u6765\u7684\u8fed\u4ee3\u4e2d\u6574\u5408\u66f4\u5e7f\u6cdb\u548c\u591a\u6837\u5316\u7684\u6570\u636e\u96c6\u6765\u514b\u670d\u8fd9\u4e00\u9650\u5236\u3002<\/p>\n

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